Terrainosaurus: realistic terrain synthesis using genetic algorithms

Synthetically generated terrain models are useful across a broad range of applications, including computer generated art & animation, virtual reality and gaming, and architecture. Existing algorithms for terrain generation suffer from a number of problems, especially that of being limited in the types of terrain that they can produce and of being difficult for the user to control. Typical applications of synthetic terrain have several factors in common: first, they require the generation of large regions of believable (though not necessarily physically correct) terrain features; and second, while real-time performance is often needed when visualizing the terrain, this is generally not the case when generating the terrain. In this thesis, I present a new, design-by-example method for synthesizing terrain height fields. In this approach, the user designs the layout of the terrain by sketching out simple regions using a CAD-style interface, and specifies the desired terrain characteristics of each region by providing example height fields displaying these characteristics (these height fields will typically come from real-world GIS data sources). A height field matching the user's design is generated at several levels of detail, using a genetic algorithm to blend together chunks of elevation data from the example height fields in a visually plausible manner. This method has the advantage of producing an unlimited diversity of reasonably realistic results, while requiring relatively little user effort and expertise. The guided randomization inherent in the genetic algorithm allows the algorithm to come up with novel arrangements of features, while still approximating user-specified constraints

Predatory impact of the myctophid fish community on zooplankton in the Scotia Sea (Southern Ocean)

Myctophids are the most abundant mesopelagic fishes in the Southern Ocean, although their trophic role within the predominantly krill-based food web in regions south of the Antarctic Polar Front (APF) is poorly resolved. This study therefore examined the diets of 10 species of myctophid fishes: Electrona antarctica, E. carlsbergi, Gymnoscopelus braueri, G. fraseri, G. nicholsi, Krefftichthys anderssoni, Protomyctophum bolini, P. tenisoni, P. choriodon and Nannobrachium achirus, in the Scotia Sea, together with their predatory impact on the underlying zooplankton community. Myctophids and their prey were sampled in different seasons by scientific nets deployed across the Scotia Sea from the sea-ice zone to the APF. Based on the percentage index of relative importance, myctophids had high overlap in their diets, although the data indicate dietary specialisation in some species. There was also a distinct switch in diet, from copepods to euphausiids and amphipods, with increasing myctophid size. Myctophid predation impacted daily copepod production by between 0.01 and 5%, with Calanus simillimus being most impacted. Total annual consumption of copepods was around 1.5 million t (Mt) per year. All myctophids preyed upon the euphausiid Thysanoessa spp., consuming ~12% of its daily productivity and around 4 Mt per year. However, only larger myctophid species preyed upon Antarctic krill Euphausia superba, consuming 2% of its daily productivity, which could amount to as much as 17 Mt per year. Themisto gaudichaudii was also an important dietary component, with 4% of its daily productivity being consumed, amounting to around 2 Mt per year. This study demonstrates that myctophids link secondary productivity to higher predators both through krill-dependent and krill-independent trophic pathways

Myctophid fish (Family Myctophidae) are central consumers in the food web of the Scotia Sea (Southern Ocean)

Myctophid fish are the most abundant and diverse mesopelagic fishes in the Southern Ocean. They are a conduit of energy between primary consumers and higher marine predators, and between the upper surface layers and the mesopelagic depths. However, there remain major uncertainties about their ecology, particularly regarding their role in Southern Ocean food webs, which are often regarded as dominated by Antarctic krill in waters south of the Antarctic Polar Front. Limited data on the feeding ecology of myctophids has made it difficult to assess the importance of myctophids as consumers of krill and how they fit in the traditional view of a krill-dominated system (diatom-krill-higher predator). We provide a new assessment of the role of myctophids in Southern Ocean food webs using information from recent trophodynamic studies of myctophids conducted in the Scotia Sea, one of the most productive regions of the Southern Ocean and a region that sustains both major populations of higher predators (sea birds, seals, whales) and important commercial fisheries (krill, toothfish and mackerel icefish). Collectively, these data show that myctophids have a central role in Southern Ocean food webs as both predators and prey. Large myctophid species are prevalent consumers of krill throughout their distributional range and in different seasons in the Scotia Sea. Moreover, best estimates of both myctophid and higher predator consumption of krill to date indicate that large myctophids are the greatest predators of krill in this region, consuming almost as much krill as all other vertebrate predators of krill. Nevertheless, there are several smaller myctophid species that do not eat krill, instead consuming copepods and other small euphausiids. Myctophids therefore link primary producers to higher predators through both krill-dependent and krill-independent trophic pathways, emphasizing their importance in regional food webs. Consequently, myctophid-based trophic pathways are unlikely to be exempt from the direct consequences of a redistribution and/or reduction in krill population biomass. The extent to which myctophids can maintain food web stability and sustain higher predator populations during periods of prolonged reductions in krill abundance is considered further

Forty-Year Analysis of Colonoscopic Surveillance Program for Neoplasia in Ulcerative Colitis: An Updated Overview

C.R.C. was funded by the Derek Willoughby Fund for Inflammatory Research. A.L.H. and T.A.G. were funded by Higher Education Funding Council of England

The sweet spot in sustainability: a framework for corporate assessment in sugar manufacturing

The assessment of corporate sustainability has become an increasingly important topic, both within academia and in industry. For manufacturing companies to conform to their commitments to sustainable development, a standard and reliable measurement framework is required. There is, however, a lack of sector-specific and empirical research in many areas, including the sugar industry. This paper presents an empirically developed framework for the assessment of corporate sustainability within the Thai sugar industry. Multiple case studies were conducted, and a survey using questionnaires was also employed to enhance the power of generalisation. The developed framework is an accurate and reliable measurement instrument of corporate sustainability, and guidelines to assess qualitative criteria are put forward. The proposed framework can be used for a company’s self-assessment and for guiding practitioners in performance improvement and policy decision-maki

Seasonal variation in the predatory impact of myctophids on zooplankton in the Scotia Sea (Southern Ocean)

Myctophids are the biomass-dominant mesopelagic fishes in the Southern Ocean, but their trophic role within the pelagic food web south of the Antarctic Polar Front is poorly resolved from a seasonal perspective at the ocean-basin scale. In this study, the predatory impact of the predominant Southern Ocean myctophid community (Electrona antarctica, Electrona carlsbergi, Gymnoscopelus braueri, Gymnoscopelus fraseri, Gymnoscopelus nicholsi, Protomyctophum bolini, Protomyctophum tenisoni, Protomyctophum choriodon, Krefftichthys anderssoni and Nannobrachium achirus) on their zooplankton prey was examined during austral spring, summer and autumn in the Scotia Sea, one of the most productive regions of the Southern Ocean. Seasonal variations in diet and predation rates were apparent for all species. Based on the percentage index of relative importance, myctophids had high overlap in their diets, with all species mostly consuming copepods, small euphausiids and amphipods. Myctophid size was a key determinant of diet in the region, with larger species and intra-specific size classes consuming larger prey. Cluster analyses revealed myctophid feeding guilds that appeared to change seasonally, although there was little evidence of dietary specialisation. Myctophid predation on the daily productivity of most copepod species was relatively low across seasons (<7%), except for Calanus simillimus that was predated upon highly in summer (∼26%). From the macrozooplankton component of the prey field, the myctophid community consumed substantial proportions of the euphausiid Thysanoessa spp. in each season (∼7 to 76% daily productivity), particularly in summer. Relatively high proportions of the daily Antarctic krill (Euphausia superba) productivity (∼8–58%) were also consumed by the larger myctophid species, particularly in summer by Electrona antarctica, suggesting increased competition for krill resources during the higher predator breeding season and possible reductions in food web stability during periods of reduced krill availability at this time. The amphipod Themisto gaudichaudii formed an important part of the larger myctophid species’ diet in all seasons, with between 10 and 38% of its daily productivity being consumed. Myctophid predation on the daily productivity of salps was up to 4%, whilst their impact on ostracods and pteropods was negligible (<0.1% of daily productivity) in all seasons. This study demonstrates that Southern Ocean myctophids link secondary productivity to higher predators through both krill-independent and krill-dependent trophic pathways across seasons, with myctophids comprising a more krill-dependent pathway during austral summer

Life cycle, distribution and trophodynamics of the lanternfish Krefftichthys anderssoni (Lönnberg, 1905) in the Scotia Sea

Myctophid fish play an important role in the Southern Ocean pelagic food web. The lanternfish Krefftichthys anderssoni is one of the most common myctophids in the region, but its ecology is poorly known. This study examines spatial and temporal patterns in the species distribution of density, life cycle, population structure and diet using samples collected by mid-water trawl nets deployed in different seasons across the Scotia Sea. Virtually absent from the sea-ice zone, the species was most abundant in the northern Scotia Sea around the Georgia Basin at depths below 400 m that are associated with the Circumpolar Deep Water. The species migrated during night from waters deeper than 700 m to waters above the 400 m following their main prey species: the copepods Rhincalanus gigas and Calanoides acutus and euphausiids of the Thysanoessa genus. Larvae length distribution and post-larvae length-frequency analyses suggested a life cycle of ~3 years with spawning and recruitment strongly connected with APF and the South Georgia shelf. Our results show that species spatial distribution, population structure and diet changed both seasonally and ontogenetically. This study is the most comprehensive examination of the ecology of K. anderssoni in the Southern Ocean to date and contributes to resolving how pelagic food webs and ecosystems operate in the region

Species distribution models describe spatial variability in mesopelagic fish abundance in the Southern Ocean

Mesopelagic fishes play a central role in the transfer of energy through open-ocean food webs, particularly in the Southern Ocean where they are both important predators of zooplankton and a key prey group for many higher predators. However, they are notoriously difficult to sample which has limited our understanding of the bio-physical predictors of their abundance and spatiotemporal variability. Species distribution models can be used to help understand species’ ecological requirements by relating records of their presence or abundance to environmental data. Here, we used data from Myctobase – a new circumpolar database of mesopelagic fishes – to model patterns in abundance of eight key myctophid species (family Myctophidae) and the genus Bathylagus in the Southern Ocean south of 45°S. We developed species-specific boosted regression tree models to obtain circumpolar predictions of abundance. Average daytime and night-time summer predictions for the period 1997 – 2011 at 0 – 200m depths were generated for each species. Depth and solar position were important predictors and species were stratified in their depth distribution. For all species except for G. nicholsi, there was an interaction between depth of capture and solar position, reflecting diel vertical migration. Other important variables included sea surface temperature, dissolved oxygen at 200 m, chlorophyll-a, and sea surface height, indicating an association with water mass properties. Circumpolar patterns of abundance varied between species with some displaying affinities for oceanic regions at Antarctic latitudes (eg. E. antarctica and Bathylagus spp.) or sub-Antarctic latitudes (eg. K. anderssoni and P. tenisoni); and affinities for shelf regions (eg.P. bolini and G. nicholsi). Our findings suggest that the abundance of mesopelagic fish is influenced by diel vertical migration and meso- and sub-mesoscale oceanographic features, with the Polar Front being a major delimiting feature. Our study showed contrasting patterns in community composition with higher species diversity north of the Polar Front that might be indicative of latitudinal variability in food web structure. Our spatial analysis is an important step toward resolving what determines important habitat for mesopelagic fishes, providing foundational information for understanding shifting food web dynamics into the future

MicroRNAs in cardiac arrhythmia: DNA sequence variation of MiR-1 and MiR-133A in long QT syndrome.

Long QT syndrome (LQTS) is a genetic cardiac condition associated with prolonged ventricular repolarization, primarily a result of perturbations in cardiac ion channels, which predisposes individuals to life-threatening arrhythmias. Using DNA screening and sequencing methods, over 700 different LQTS-causing mutations have been identified in 13 genes worldwide. Despite this, the genetic cause of 30-50% of LQTS is presently unknown. MicroRNAs (miRNAs) are small (∼ 22 nucleotides) noncoding RNAs which post-transcriptionally regulate gene expression by binding complementary sequences within messenger RNAs (mRNAs). The human genome encodes over 1800 miRNAs, which target about 60% of human genes. Consequently, miRNAs are likely to regulate many complex processes in the body, indeed aberrant expression of various miRNA species has been implicated in numerous disease states, including cardiovascular diseases. MiR-1 and MiR-133A are the most abundant miRNAs in the heart and have both been reported to regulate cardiac ion channels. We hypothesized that, as a consequence of their role in regulating cardiac ion channels, genetic variation in the genes which encode MiR-1 and MiR-133A might explain some cases of LQTS. Four miRNA genes (miR-1-1, miR-1-2, miR-133a-1 and miR-133a-2), which encode MiR-1 and MiR-133A, were sequenced in 125 LQTS probands. No genetic variants were identified in miR-1-1 or miR-133a-1; but in miR-1-2 we identified a single substitution (n.100A> G) and in miR-133a-2 we identified two substitutions (n.-19G> A and n.98C> T). None of the variants affect the mature miRNA products. Our findings indicate that sequence variants of miR-1-1, miR-1-2, miR-133a-1 and miR-133a-2 are not a cause of LQTS in this cohort

Mechanisms of carbon dioxide detection in the earthworm Dendrobaena veneta

IntroductionCarbon dioxide (CO2) is a critical biological signal that is noxious to many animals at high concentrations. The earthworm Dendrobaena veneta lives in subterranean burrows containing high levels of CO2 and respires through its skin. Despite the ecological and agricultural importance of earthworms, relatively little is known about how they make decisions in their environment, including their response to elevated levels of CO2.MethodsTo examine CO2 detection in this species, we designed the exudate assay, in which we placed an earthworm in a sealed container, exposed it to varying concentrations of CO2 for one minute, and recorded the amount of exudate secreted. Because earthworms excrete exudate in response to noxious stimuli, we hypothesized that the amount of exudate produced was proportional to the amount of irritation. We repeated these experiments after treatment with several blockers for molecules with potential involvement in CO2 detection, including carbonic anhydrases, guanylate cyclase, TRPA1, ASICs, and OTOP channels. We also confirmed the presence of homologous transcripts for each of these gene families in an epithelial transcriptome for D. veneta. Additionally, since organisms often detect CO2 levels indirectly by monitoring the conversion to carbonic acid (a weak acid), we used the exudate assay to evaluate aversion to additional weak acids (formic acid, acetic acid, and propionic acid).ResultsEarthworms excreted significantly more exudate in response to CO2 in a dosage-dependent manner, and this response was muted by the general carbonic anhydrase inhibitor acetazolamide, the carbonic anhydrase IX/XII inhibitor indisulam, the calcium channel blocker ruthenium red, the sodium channel blocker amiloride, and the acid-sensing ion channel blocker diminazene aceturate.DiscussionThese data provide evidence of the role of carbonic anhydrase and epithelial sodium channels in earthworm CO2 detection, establish that, similar to other subterranean-dwelling animals, earthworms are extremely tolerant of CO2, and contribute to our understanding of the mechanisms used by earthworms to detect and react to weak acids in their environment